Big Genes, Small Effectors: Pea Aphid Cassette Effector Families Composed From Miniature Exons.
Identifieur interne : 000206 ( Main/Exploration ); précédent : 000205; suivant : 000207Big Genes, Small Effectors: Pea Aphid Cassette Effector Families Composed From Miniature Exons.
Auteurs : Matthew Dommel [États-Unis] ; Jonghee Oh [États-Unis] ; Jose Carlos Huguet-Tapia [États-Unis] ; Endrick Guy [France] ; Hélène Boulain [France] ; Akiko Sugio [France] ; Marimuthu Murugan [États-Unis] ; Fabrice Legeai [France] ; Michelle Heck [États-Unis] ; C Michael Smith [États-Unis] ; Frank F. White [États-Unis]Source :
- Frontiers in plant science [ 1664-462X ] ; 2020.
Abstract
Aphids secrete proteins from their stylets that evidence indicates function similar to pathogen effectors for virulence. Here, we describe two small candidate effector gene families of the pea aphid, Acyrthosiphon pisum, that share highly conserved secretory signal peptide coding regions and divergent non-secretory coding sequences derived from miniature exons. The KQY candidate effector family contains eleven members with additional isoforms, generated by alternative splicing. Pairwise comparisons indicate possible four unique KQY families based on coding regions without the secretory signal region. KQY1a, a representative of the family, is encoded by a 968 bp mRNA and a gene that spans 45.7 kbp of the genome. The locus consists of 37 exons, 33 of which are 15 bp or smaller. Additional KQY members, as well as members of the KHI family, share similar features. Differential expression analyses indicate that the genes are expressed preferentially in salivary glands. Proteomic analysis on salivary glands and saliva revealed 11 KQY members in salivary proteins, and KQY1a was detected in an artificial diet solution after aphid feeding. A single KQY locus and two KHI loci were identified in Myzus persicae, the peach aphid. Of the genes that can be anchored to chromosomes, loci are mostly scattered throughout the genome, except a two-gene region (KQY4/KQY6). We propose that the KQY family expanded in A. pisum through combinatorial assemblies of a common secretory signal cassette and novel coding regions, followed by classical gene duplication and divergence.
DOI: 10.3389/fpls.2020.01230
PubMed: 33013944
PubMed Central: PMC7495047
Affiliations:
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States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology, Kansas State University, Manhattan, KS</wicri:regionArea><placeName><region type="state">Kansas</region></placeName></affiliation></author><author><name sortKey="Huguet Tapia, Jose Carlos" sort="Huguet Tapia, Jose Carlos" uniqKey="Huguet Tapia J" first="Jose Carlos" last="Huguet-Tapia">Jose Carlos Huguet-Tapia</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Pathology, University of Florida, Gainesville, FL, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology, University of Florida, Gainesville, FL</wicri:regionArea><placeName><region type="state">Floride</region></placeName></affiliation></author><author><name sortKey="Guy, Endrick" sort="Guy, Endrick" uniqKey="Guy E" first="Endrick" last="Guy">Endrick Guy</name><affiliation wicri:level="1"><nlm:affiliation>INRAE, UMR Institute of Genetics, Environment and Plant Protection, Le Rheu, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>INRAE, UMR Institute of Genetics, Environment and Plant Protection, Le Rheu</wicri:regionArea><wicri:noRegion>Le Rheu</wicri:noRegion><wicri:noRegion>Le Rheu</wicri:noRegion></affiliation></author><author><name sortKey="Boulain, Helene" sort="Boulain, Helene" uniqKey="Boulain H" first="Hélène" last="Boulain">Hélène Boulain</name><affiliation wicri:level="1"><nlm:affiliation>INRAE, UMR Institute of Genetics, Environment and Plant Protection, Le Rheu, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>INRAE, UMR Institute of Genetics, Environment and Plant Protection, Le Rheu</wicri:regionArea><wicri:noRegion>Le Rheu</wicri:noRegion><wicri:noRegion>Le Rheu</wicri:noRegion></affiliation></author><author><name sortKey="Sugio, Akiko" sort="Sugio, Akiko" uniqKey="Sugio A" first="Akiko" last="Sugio">Akiko Sugio</name><affiliation wicri:level="1"><nlm:affiliation>INRAE, UMR Institute of Genetics, Environment and Plant Protection, Le Rheu, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>INRAE, UMR Institute of Genetics, Environment and Plant Protection, Le Rheu</wicri:regionArea><wicri:noRegion>Le Rheu</wicri:noRegion><wicri:noRegion>Le Rheu</wicri:noRegion></affiliation></author><author><name sortKey="Murugan, Marimuthu" sort="Murugan, Marimuthu" uniqKey="Murugan M" first="Marimuthu" last="Murugan">Marimuthu Murugan</name><affiliation wicri:level="2"><nlm:affiliation>Department of Entomology, Kansas State University, Manhattan, KS, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Entomology, Kansas State University, Manhattan, KS</wicri:regionArea><placeName><region type="state">Kansas</region></placeName></affiliation></author><author><name sortKey="Legeai, Fabrice" sort="Legeai, Fabrice" uniqKey="Legeai F" first="Fabrice" last="Legeai">Fabrice Legeai</name><affiliation wicri:level="1"><nlm:affiliation>INRAE, UMR Institute of Genetics, Environment and Plant Protection, Le Rheu, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>INRAE, UMR Institute of Genetics, Environment and Plant Protection, Le Rheu</wicri:regionArea><wicri:noRegion>Le Rheu</wicri:noRegion><wicri:noRegion>Le Rheu</wicri:noRegion></affiliation></author><author><name sortKey="Heck, Michelle" sort="Heck, Michelle" uniqKey="Heck M" first="Michelle" last="Heck">Michelle Heck</name><affiliation wicri:level="4"><nlm:affiliation>USDA-ARS, Cornell University, Ithaca, NY, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>USDA-ARS, Cornell University, Ithaca, NY</wicri:regionArea><placeName><region type="state">État de New York</region><settlement type="city">Ithaca (New York)</settlement></placeName><orgName type="university">Université Cornell</orgName></affiliation></author><author><name sortKey="Smith, C Michael" sort="Smith, C Michael" uniqKey="Smith C" first="C Michael" last="Smith">C Michael Smith</name><affiliation wicri:level="2"><nlm:affiliation>Department of Entomology, Kansas State University, Manhattan, KS, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Entomology, Kansas State University, Manhattan, KS</wicri:regionArea><placeName><region type="state">Kansas</region></placeName></affiliation></author><author><name sortKey="White, Frank F" sort="White, Frank F" uniqKey="White F" first="Frank F" last="White">Frank F. White</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Pathology, University of Florida, Gainesville, FL, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology, University of Florida, Gainesville, FL</wicri:regionArea><placeName><region type="state">Floride</region></placeName></affiliation></author></analytic><series><title level="j">Frontiers in plant science</title><idno type="ISSN">1664-462X</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Aphids secrete proteins from their stylets that evidence indicates function similar to pathogen effectors for virulence. Here, we describe two small candidate effector gene families of the pea aphid, <i>Acyrthosiphon pisum</i>, that share highly conserved secretory signal peptide coding regions and divergent non-secretory coding sequences derived from miniature exons. The KQY candidate effector family contains eleven members with additional isoforms, generated by alternative splicing. Pairwise comparisons indicate possible four unique KQY families based on coding regions without the secretory signal region. KQY1a, a representative of the family, is encoded by a 968 bp mRNA and a gene that spans 45.7 kbp of the genome. The locus consists of 37 exons, 33 of which are 15 bp or smaller. Additional KQY members, as well as members of the KHI family, share similar features. Differential expression analyses indicate that the genes are expressed preferentially in salivary glands. Proteomic analysis on salivary glands and saliva revealed 11 KQY members in salivary proteins, and KQY1a was detected in an artificial diet solution after aphid feeding. A single KQY locus and two KHI loci were identified in <i>Myzus persicae</i>, the peach aphid. Of the genes that can be anchored to chromosomes, loci are mostly scattered throughout the genome, except a two-gene region (KQY4/KQY6). We propose that the KQY family expanded in <i>A. pisum</i> through combinatorial assemblies of a common secretory signal cassette and novel coding regions, followed by classical gene duplication and divergence.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">33013944</PMID><DateRevised><Year>2020</Year><Month>10</Month><Day>06</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1664-462X</ISSN><JournalIssue CitedMedium="Print"><Volume>11</Volume><PubDate><Year>2020</Year></PubDate></JournalIssue><Title>Frontiers in plant science</Title><ISOAbbreviation>Front Plant Sci</ISOAbbreviation></Journal><ArticleTitle>Big Genes, Small Effectors: Pea Aphid Cassette Effector Families Composed From Miniature Exons.</ArticleTitle><Pagination><MedlinePgn>1230</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3389/fpls.2020.01230</ELocationID><Abstract><AbstractText>Aphids secrete proteins from their stylets that evidence indicates function similar to pathogen effectors for virulence. Here, we describe two small candidate effector gene families of the pea aphid, <i>Acyrthosiphon pisum</i>, that share highly conserved secretory signal peptide coding regions and divergent non-secretory coding sequences derived from miniature exons. The KQY candidate effector family contains eleven members with additional isoforms, generated by alternative splicing. Pairwise comparisons indicate possible four unique KQY families based on coding regions without the secretory signal region. KQY1a, a representative of the family, is encoded by a 968 bp mRNA and a gene that spans 45.7 kbp of the genome. The locus consists of 37 exons, 33 of which are 15 bp or smaller. Additional KQY members, as well as members of the KHI family, share similar features. Differential expression analyses indicate that the genes are expressed preferentially in salivary glands. Proteomic analysis on salivary glands and saliva revealed 11 KQY members in salivary proteins, and KQY1a was detected in an artificial diet solution after aphid feeding. A single KQY locus and two KHI loci were identified in <i>Myzus persicae</i>, the peach aphid. Of the genes that can be anchored to chromosomes, loci are mostly scattered throughout the genome, except a two-gene region (KQY4/KQY6). We propose that the KQY family expanded in <i>A. pisum</i> through combinatorial assemblies of a common secretory signal cassette and novel coding regions, followed by classical gene duplication and divergence.</AbstractText><CopyrightInformation>Copyright © 2020 Dommel, Oh, Huguet-Tapia, Guy, Boulain, Sugio, Murugan, Legeai, Heck, Smith and White.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Dommel</LastName><ForeName>Matthew</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, University of Florida, Gainesville, FL, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Oh</LastName><ForeName>Jonghee</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, Kansas State University, Manhattan, KS, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Huguet-Tapia</LastName><ForeName>Jose Carlos</ForeName><Initials>JC</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, University of Florida, Gainesville, FL, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Guy</LastName><ForeName>Endrick</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>INRAE, UMR Institute of Genetics, Environment and Plant Protection, Le Rheu, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Boulain</LastName><ForeName>Hélène</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>INRAE, UMR Institute of Genetics, Environment and Plant Protection, Le Rheu, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sugio</LastName><ForeName>Akiko</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>INRAE, UMR Institute of Genetics, Environment and Plant Protection, Le Rheu, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Murugan</LastName><ForeName>Marimuthu</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Entomology, Kansas State University, Manhattan, KS, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Legeai</LastName><ForeName>Fabrice</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>INRAE, UMR Institute of Genetics, Environment and Plant Protection, Le Rheu, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Heck</LastName><ForeName>Michelle</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>USDA-ARS, Cornell University, Ithaca, NY, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Smith</LastName><ForeName>C Michael</ForeName><Initials>CM</Initials><AffiliationInfo><Affiliation>Department of Entomology, Kansas State University, Manhattan, KS, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>White</LastName><ForeName>Frank F</ForeName><Initials>FF</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, University of Florida, Gainesville, FL, United States.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>09</Month><Day>02</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Front Plant Sci</MedlineTA><NlmUniqueID>101568200</NlmUniqueID><ISSNLinking>1664-462X</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Acyrthosiphon pisum</Keyword><Keyword MajorTopicYN="N">effector protein</Keyword><Keyword MajorTopicYN="N">gene family</Keyword><Keyword MajorTopicYN="N">pea aphid</Keyword><Keyword MajorTopicYN="N">proteomic analysis</Keyword><Keyword MajorTopicYN="N">salivary 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York)</li></settlement><orgName><li>Université Cornell</li></orgName></list><tree><country name="États-Unis"><region name="Floride"><name sortKey="Dommel, Matthew" sort="Dommel, Matthew" uniqKey="Dommel M" first="Matthew" last="Dommel">Matthew Dommel</name></region><name sortKey="Heck, Michelle" sort="Heck, Michelle" uniqKey="Heck M" first="Michelle" last="Heck">Michelle Heck</name><name sortKey="Huguet Tapia, Jose Carlos" sort="Huguet Tapia, Jose Carlos" uniqKey="Huguet Tapia J" first="Jose Carlos" last="Huguet-Tapia">Jose Carlos Huguet-Tapia</name><name sortKey="Murugan, Marimuthu" sort="Murugan, Marimuthu" uniqKey="Murugan M" first="Marimuthu" last="Murugan">Marimuthu Murugan</name><name sortKey="Oh, Jonghee" sort="Oh, Jonghee" uniqKey="Oh J" first="Jonghee" last="Oh">Jonghee Oh</name><name sortKey="Smith, C Michael" sort="Smith, C Michael" uniqKey="Smith C" first="C Michael" last="Smith">C Michael Smith</name><name sortKey="White, Frank F" sort="White, Frank F" uniqKey="White F" first="Frank F" last="White">Frank F. White</name></country><country name="France"><noRegion><name sortKey="Guy, Endrick" sort="Guy, Endrick" uniqKey="Guy E" first="Endrick" last="Guy">Endrick Guy</name></noRegion><name sortKey="Boulain, Helene" sort="Boulain, Helene" uniqKey="Boulain H" first="Hélène" last="Boulain">Hélène Boulain</name><name sortKey="Legeai, Fabrice" sort="Legeai, Fabrice" uniqKey="Legeai F" first="Fabrice" last="Legeai">Fabrice Legeai</name><name sortKey="Sugio, Akiko" sort="Sugio, Akiko" uniqKey="Sugio A" first="Akiko" last="Sugio">Akiko Sugio</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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